STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Acid_6183PFAM: sulfatase; KEGG: cyb:CYB_2088 sulfatase. (707 aa)    
Predicted Functional Partners:
Acid_6180
PFAM: type I phosphodiesterase/nucleotide pyrophosphatase; KEGG: hma:rrnAC3325 sulfatase arylsulfatase A-like.
 
     0.804
Acid_6181
PFAM: type I phosphodiesterase/nucleotide pyrophosphatase; KEGG: nph:NP5198A hypothetical protein.
 
     0.783
Acid_6305
PFAM: sulfatase; KEGG: ptr:465478 steryl-sulfatase.
  
     0.775
Acid_4083
PFAM: sulfatase; KEGG: bja:bll4741 putative arylsulfatase protein.
  
     0.707
Acid_7564
PFAM: protein of unknown function DUF323; KEGG: bja:bll4742 hypothetical protein.
 
   0.611
Acid_6646
PFAM: Radical SAM domain protein; KEGG: bth:BT0238 transcriptional regulator.
 
   0.606
Acid_6182
KEGG: cya:CYA_1684 hypothetical protein.
 
     0.579
Acid_4849
PFAM: Radical SAM domain protein; KEGG: mac:MA2647 arylsulfatase regulator.
 
   0.570
Acid_6179
Hypothetical protein.
       0.493
Acid_1975
PFAM: type I phosphodiesterase/nucleotide pyrophosphatase; KEGG: gvi:gll4223 unknown protein.
 
     0.453
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.