STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Acid_6229PFAM: glycosyl transferase, group 1; KEGG: mfa:Mfla_1273 glycosyl transferase, group 1. (353 aa)    
Predicted Functional Partners:
Acid_6230
PFAM: glycosyl transferase, group 1; KEGG: gme:Gmet_2000 glycosyl transferase, group 1.
 
     0.853
Acid_6233
PFAM: glycosyl transferase, group 1; Methyltransferase type 11; KEGG: rba:RB9627 probable mannosyltransferase A (MtfA).
     0.751
Acid_6634
PFAM: glycosyl transferase, group 1; KEGG: syf:Synpcc7942_2025 probable glycosyltransferase.
  
     0.750
Acid_6231
PFAM: glycosyl transferase, group 1; KEGG: mhu:Mhun_2129 glycosyl transferase, group 1.
 
    
0.726
Acid_6228
TIGRFAM: dTDP-glucose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal domain; KEGG: eba:ebA2278 putative dTDP-D-glucose 4, 6-dehydratase; Belongs to the NAD(P)-dependent epimerase/dehydratase family. dTDP-glucose dehydratase subfamily.
 
  
 0.704
Acid_6234
PFAM: ABC-2 type transporter; KEGG: pfo:Pfl_4049 ABC-2.
  
  
 0.676
Acid_6227
PFAM: dTDP-4-dehydrorhamnose 3,5-epimerase related; KEGG: bha:BH3366 spore coat polysaccharide synthesis (dTDP-4-dehydrorhamnose 3,5-epimerase).
 
  
 0.674
Acid_1359
PFAM: glycosyl transferase, group 1; KEGG: mbu:Mbur_0725 glycosyl transferase, group 1.
  
     0.636
Acid_6232
Hypothetical protein.
       0.631
Acid_4651
PFAM: glycosyl transferase, group 1; KEGG: ana:alr5237 probable glycosyl transferase.
  
     0.596
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
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