STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Acid_6243PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: bpa:BPP3893 hypothetical protein. (129 aa)    
Predicted Functional Partners:
Acid_6244
Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein, AraC type; KEGG: nfa:nfa51240 putative transcriptional regulator.
 
     0.710
Acid_6241
PFAM: protein of unknown function DUF214; KEGG: aba:Acid345_4627 ABC efflux pump, inner membrane subunit.
       0.556
Acid_6242
PFAM: transcriptional regulator PadR family protein; KEGG: aba:Acid345_0755 transcriptional regulator, PadR-like family.
       0.556
Acid_5224
PFAM: Activator of Hsp90 ATPase 1 family protein; KEGG: ret:RHE_PE00139 hypothetical protein.
 
     0.465
Acid_4020
PFAM: Activator of Hsp90 ATPase 1 family protein; KEGG: ret:RHE_PE00139 hypothetical protein.
 
     0.430
Acid_0026
PFAM: bifunctional deaminase-reductase domain protein; KEGG: cac:CAC1495 enzyme of dihydrofolate reductase family, ortholog YWFD B.subtilis.
 
     0.416
Acid_6255
PFAM: bifunctional deaminase-reductase domain protein; KEGG: sco:SCO2813 hypothetical protein.
 
     0.414
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.