STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Acid_6363PFAM: Xylose isomerase domain protein TIM barrel; KEGG: rba:RB12897 hypothetical protein-signal peptide prediction. (303 aa)    
Predicted Functional Partners:
Acid_2874
KEGG: rba:RB6799 hypothetical protein-transmembrane prediction.
  
    0.718
Acid_6537
KEGG: rba:RB11994 conserved hypothetical protein, putative secreted protein.
  
     0.705
Acid_1801
KEGG: rba:RB6799 hypothetical protein-transmembrane prediction.
  
    0.702
Acid_1134
PFAM: glycosyl hydrolase, family 88; KEGG: bcl:ABC3274 unsaturated glucuronyl hydrolase.
 
    0.691
Acid_2595
PFAM: Xylose isomerase domain protein TIM barrel; KEGG: bth:BT1031 hypothetical protein.
  
     0.689
Acid_2075
KEGG: rba:RB7871 hypothetical protein-signal peptide and transmembrane prediction.
  
     0.683
Acid_3533
KEGG: rba:RB6799 hypothetical protein-transmembrane prediction.
  
    0.683
Acid_7682
PFAM: FG-GAP repeat protein; KEGG: rba:RB5763 hypothetical protein-signal peptide prediction.
  
     0.681
Acid_6091
KEGG: rba:RB609 conserved hypothetical protein, putative xylan esterase.
  
     0.662
Acid_4767
KEGG: rba:RB6409 hypothetical protein.
  
     0.660
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.