STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Acid_6368KEGG: bpa:BPP0665 hypothetical protein. (627 aa)    
Predicted Functional Partners:
Acid_0894
KEGG: syn:slr1753 hypothetical protein.
  
     0.761
Acid_1229
PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: psb:Psyr_4684 biotin synthesis protein BioC.
  
     0.756
Acid_4940
Hypothetical protein; KEGG: rso:RS05070 putative hemagglutinin/hemolysin-related protein.
  
     0.755
Acid_5629
KEGG: lac:LBA1470 hypothetical protein.
  
     0.752
Acid_7603
PFAM: plasmid encoded RepA protein; KEGG: rme:Rmet_2825 plasmid encoded RepA protein.
  
     0.741
Acid_3523
Hypothetical protein; KEGG: aba:Acid345_2388 Cna B-type protein.
  
     0.736
Acid_2840
Hypothetical protein; KEGG: aba:Acid345_0663 TonB-dependent receptor.
  
     0.726
Acid_7758
KEGG: mac:MA1904 hypothetical protein.
  
     0.722
Acid_0020
SMART: Tetratricopeptide domain protein; KEGG: gsu:GSU3191 TPR domain protein.
  
     0.721
Acid_3368
Hypothetical protein; KEGG: aba:Acid345_1501 TonB-dependent receptor.
  
     0.707
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.