STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Acid_6370KEGG: cch:Cag_1311 hypothetical protein. (74 aa)    
Predicted Functional Partners:
Acid_3460
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rru:Rru_A2175 oligopeptide/dipeptide ABC transporter, ATP-binding protein-like.
  
  
 0.855
Acid_3458
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: aae:aq_481 peptide transport system permease protein.
  
  
 0.854
Acid_6371
KEGG: syn:sll0624 hypothetical protein.
       0.783
Acid_3459
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bja:blr1357 peptide ABC transporter ATP-binding protein.
  
  
 0.719
Acid_3456
PFAM: extracellular solute-binding protein, family 5; KEGG: aae:aq_1441 peptide transport system substrate-binding protein.
  
 
 0.570
Acid_7875
PFAM: extracellular solute-binding protein, family 5; KEGG: aba:Acid345_1732 ABC peptide transporter, periplasmic ligand binding protein.
  
 
 0.570
Acid_6372
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: csa:Csal_2676 molybdate ABC transporter, permease protein.
     
 0.460
Acid_6374
PFAM: formylmethanofuran dehydrogenase, subunit E region; KEGG: aba:Acid345_0503 formylmethanofuran dehydrogenase, subunit E.
       0.450
thiE-2
Thiamine-phosphate diphosphorylase; Condenses 4-methyl-5-(beta-hydroxyethyl)thiazole monophosphate (THZ-P) and 2-methyl-4-amino-5-hydroxymethyl pyrimidine pyrophosphate (HMP-PP) to form thiamine monophosphate (TMP).
     
 0.437
Acid_6373
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sth:STH998 molybdenum ABC transporter ATP-binding protein; Belongs to the ABC transporter superfamily.
  
    0.434
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
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