STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Acid_6384KEGG: aba:Acid345_4722 putative protein-S-isoprenylcysteine methyltransferase-like. (183 aa)    
Predicted Functional Partners:
Acid_6383
TIGRFAM: lipopolysaccharide heptosyltransferase I; PFAM: glycosyl transferase, family 9; KEGG: aba:Acid345_4721 glycosyl transferase, family 9.
       0.799
Acid_6382
Hypothetical protein.
       0.668
Acid_6381
TIGRFAM: lipopolysaccharide heptosyltransferase II; PFAM: glycosyl transferase, family 9; KEGG: gsu:GSU2256 ADP-heptose--LPS heptosyltransferase II, putative.
       0.629
Acid_6380
PFAM: protein kinase; SMART: serine/threonine protein kinase; KEGG: aba:Acid345_4049 serine/threonine protein kinase with TPR repeats.
       0.440
Acid_2665
PFAM: Cna B domain protein; TonB-dependent receptor, plug; KEGG: aba:Acid345_0918 Cna B-type protein.
  
     0.402
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.