STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Acid_6386PFAM: amidohydrolase 2; KEGG: aba:Acid345_0988 amidohydrolase 2. (414 aa)    
Predicted Functional Partners:
Acid_3931
KEGG: ccr:CC0985 hypothetical protein.
  
    0.730
Acid_2296
PFAM: amino acid permease-associated region; KEGG: aba:Acid345_1536 amino acid transporter.
 
     0.725
Acid_0160
KEGG: mlo:mlr1763 hypothetical protein.
  
     0.712
Acid_4605
PFAM: Cna B domain protein; KEGG: aba:Acid345_2674 hypothetical protein.
  
     0.683
Acid_6630
PFAM: amidohydrolase; KEGG: aba:Acid345_0880 amidohydrolase.
  
   
 0.671
Acid_2587
RNA polymerase, sigma-24 subunit, ECF subfamily; PFAM: sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; KEGG: bth:BT4647 RNA polymerase ECF-type sigma factor.
  
     0.656
Acid_0204
KEGG: aba:Acid345_0376 glycogen debranching enzyme-like.
  
     0.644
Acid_6627
PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: aba:Acid345_0878 hypothetical protein.
  
     0.638
Acid_0198
PFAM: glycoside hydrolase, family 9; KEGG: lin:lin0032 hypothetical protein.
  
     0.633
Acid_2242
PFAM: Xylose isomerase domain protein TIM barrel; KEGG: aba:Acid345_2848 xylose isomerase-like TIM barrel.
  
     0.600
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.