STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Acid_6400PFAM: peptidase S1 and S6, chymotrypsin/Hap; KEGG: ava:Ava_5068 peptidase S1 and S6, chymotrypsin/Hap. (257 aa)    
Predicted Functional Partners:
Acid_6399
PFAM: PDZ/DHR/GLGF domain protein; KEGG: gvi:glr3741 serine protease.
 
    
0.835
Acid_6401
PFAM: regulatory protein, LuxR; KEGG: gvi:glr3742 LuxR family transcriptional regulatory protein.
     
 0.775
Acid_4810
PFAM: short-chain dehydrogenase/reductase SDR; MaoC domain protein dehydratase; KEGG: pfo:Pfl_0654 MaoC-like dehydratase.
    
 0.771
Acid_2303
PFAM: AAA ATPase, central domain protein; SMART: AAA ATPase; KEGG: mka:MK0486 ATPase of the AAA+ class.
    
 0.733
Acid_6398
PFAM: HNH endonuclease; KEGG: RGD1564952_predicted, LOC304761; similar to zinc finger, RAN-binding domain containing 3 (predicted).
 
     0.677
pnp
3' exoribonuclease; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction.
  
  
 0.618
Acid_1352
KEGG: gsu:GSU2816 sensory box histidine kinase/response regulator; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein.
  
  
 0.528
pheT
TIGRFAM: phenylalanyl-tRNA synthetase, beta subunit; KEGG: sru:SRU_2807 phenylalanyl-tRNA synthetase, beta subunit; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily.
  
  
 0.519
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
 
   
 0.505
Acid_7135
TIGRFAM: putative membrane-associated zinc metalloprotease; PFAM: PDZ/DHR/GLGF domain protein; peptidase M50; KEGG: aba:Acid345_1420 peptidase M50, putative membrane-associated zinc metallopeptidase.
 
  
 0.490
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
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