STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Acid_6415KEGG: ava:Ava_0396 hypothetical protein. (292 aa)    
Predicted Functional Partners:
Acid_6416
PFAM: Lanthionine synthetase C family protein; KEGG: mxa:MXAN_6388 lanthionine synthetase C family protein.
     0.957
Acid_6414
PFAM: aminoglycoside phosphotransferase; KEGG: ava:Ava_0395 aminoglycoside phosphotransferase.
 
     0.951
Acid_6390
KEGG: ana:alr2463 unknown protein.
 
     0.793
Acid_6104
KEGG: ana:all7320 hypothetical protein.
  
     0.622
Acid_6008
PFAM: protein of unknown function DUF1311; KEGG: ava:Ava_4773 protein of unknown function DUF1311.
  
     0.597
Acid_3484
PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: aba:Acid345_1683 tetratricopeptide repeat protein.
  
     0.560
Acid_3821
Putative transcriptional regulators, CopG/Arc/MetJ family; TIGRFAM: putative addiction module antidote protein, CC2985 family; PFAM: protein of unknown function UPF0156; KEGG: rpc:RPC_2215 putative transcriptional regulators, CopG/Arc/MetJ DNA-binding domain.
  
     0.536
Acid_6158
KEGG: aba:Acid345_0445 hypothetical protein.
  
     0.535
Acid_2577
KEGG: ana:alr3806 unknown protein.
  
     0.527
Acid_1773
PFAM: Cna B domain protein; KEGG: aba:Acid345_0900 hypothetical protein.
  
     0.524
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.