STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Acid_6544KEGG: cch:Cag_0455 hypothetical protein. (68 aa)    
Predicted Functional Partners:
Acid_6545
Hypothetical protein.
   
 
 0.842
Acid_6542
KEGG: nwi:Nwi_2484 hypothetical protein.
       0.529
Acid_6543
PFAM: protein of unknown function DUF497; KEGG: cte:CT0821 hypothetical protein.
       0.529
Acid_6546
Hypothetical protein.
       0.483
Acid_6540
PFAM: protein of unknown function DUF1501; KEGG: rba:RB8440 hypothetical protein.
       0.447
Acid_6541
PFAM: protein of unknown function DUF1549; KEGG: rba:RB8437 similar to cis/trans isomerase.
       0.447
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.