STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Acid_6618PFAM: lipopolysaccharide biosynthesis; KEGG: mca:MCA0149 chain length determinant protein. (369 aa)    
Predicted Functional Partners:
Acid_1647
PFAM: polysaccharide export protein; KEGG: gme:Gmet_1444 polysaccharide export protein.
  
  
 0.843
Acid_2694
PFAM: peptidase M56, BlaR1; KEGG: aba:Acid345_3888 peptidase M56, BlaR1.
  
  
 0.843
Acid_4638
PFAM: polysaccharide export protein; KEGG: aba:Acid345_3311 polysaccharide export protein.
  
  
 0.843
Acid_6620
PFAM: glycosyl transferase, group 1; KEGG: bxe:Bxe_A2537 putative lipopolysaccharide biosynthesis-related glycosyltransferase.
  
    0.784
Acid_6619
PFAM: O-antigen polymerase; KEGG: bxe:Bxe_A0678 hypothetical protein.
       0.773
Acid_0555
PFAM: ABC-2 type transporter; KEGG: cac:CAC2329 polysaccharide ABC transporter, permease component.
  
  
 0.771
Acid_3568
PFAM: ABC-2 type transporter; KEGG: dvu:DVUA0077 ABC transporter, permease protein.
  
  
 0.771
Acid_4640
PFAM: ABC-2 type transporter; KEGG: syn:slr0977 putative O-antigen export system permease protein, ABC-2 type transporter permease protein.
  
  
 0.771
Acid_6234
PFAM: ABC-2 type transporter; KEGG: pfo:Pfl_4049 ABC-2.
  
  
 0.771
Acid_6944
PFAM: ABC-2 type transporter; KEGG: pfo:Pfl_4064 ABC-2.
  
  
 0.771
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.