STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Acid_6659PFAM: PfkB domain protein; KEGG: atc:AGR_C_3442 hypothetical protein. (299 aa)    
Predicted Functional Partners:
psuG
Indigoidine synthase A family protein; Catalyzes the reversible cleavage of pseudouridine 5'- phosphate (PsiMP) to ribose 5-phosphate and uracil. Functions biologically in the cleavage direction, as part of a pseudouridine degradation pathway; Belongs to the pseudouridine-5'-phosphate glycosidase family.
 
 0.999
Acid_3849
1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; PFAM: histidine biosynthesis; KEGG: aba:Acid345_3688 histidine biosynthesis.
  
    0.624
Acid_7826
Inner-membrane translocator; PFAM: periplasmic binding protein/LacI transcriptional regulator; inner-membrane translocator; KEGG: sco:SCO2747 bifunctional carbohydrate binding and transport protein; Belongs to the binding-protein-dependent transport system permease family.
  
  
 0.602
Acid_1483
PFAM: thiamine pyrophosphate enzyme domain protein TPP-binding; thiamine pyrophosphate enzyme, central region; thiamine pyrophosphate enzyme TPP binding domain protein; KEGG: sma:SAV7147 putative acetolactate synthase.
  
  
 0.539
Acid_1480
PFAM: Myo-inositol catabolism IolB domain protein; KEGG: gka:GK1889 myo-inositol catabolism protein.
  
  
 0.519
Acid_2736
Uncharacterized enzyme involved in inositol metabolism; KEGG: rha:RHA1_ro01352 myo-inositol catabolism IolB protein.
  
  
 0.519
Acid_4618
KEGG: aba:Acid345_0497 metal dependent phosphohydrolase; TIGRFAM: metal dependent phophohydrolase; PFAM: Polynucleotide adenylyltransferase region; metal-dependent phosphohydrolase, HD sub domain.
 
 
    0.479
Acid_6658
PFAM: peptidase S9, prolyl oligopeptidase active site domain protein; peptidase S9B, dipeptidylpeptidase IV domain protein; KEGG: sru:SRU_2765 X-Pro dipeptidyl-peptidase.
  
    0.416
Acid_2500
KpsF/GutQ family protein; KEGG: eba:ebA1315 conserved hypothetical protein, KpsF/GutQ family; TIGRFAM: KpsF/GutQ family protein; PFAM: CBS domain containing protein; sugar isomerase (SIS); Belongs to the SIS family. GutQ/KpsF subfamily.
  
    0.414
ribH
6,7-dimethyl-8-ribityllumazine synthase; Catalyzes the formation of 6,7-dimethyl-8-ribityllumazine by condensation of 5-amino-6-(D-ribitylamino)uracil with 3,4-dihydroxy-2- butanone 4-phosphate. This is the penultimate step in the biosynthesis of riboflavin.
  
  
 0.406
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
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