STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Acid_6873Hypothetical protein. (149 aa)    
Predicted Functional Partners:
Acid_7784
Hypothetical protein; KEGG: psb:Psyr_3145 general secretion pathway protein K, putative.
  
 
 0.810
Acid_0045
PFAM: type II secretion system protein E; General secretory system II, protein E domain protein; KEGG: aba:Acid345_1576 type II secretion system protein E.
  
 
 0.714
Acid_7778
KEGG: noc:Noc_2895 type II secretion system protein E; TIGRFAM: general secretory pathway protein E; PFAM: type II secretion system protein E; General secretory system II, protein E domain protein; SMART: AAA ATPase.
  
 
 0.714
Acid_0044
PFAM: type II secretion system protein; KEGG: aba:Acid345_1575 type II secretion system protein.
  
  
 0.699
Acid_7779
PFAM: type II secretion system protein; KEGG: eba:ebA1619 general secretion pathway protein F.
  
  
 0.699
Acid_6424
TIGRFAM: DNA internalization-related competence protein ComEC/Rec2; PFAM: beta-lactamase domain protein; ComEC/Rec2-related protein; KEGG: aba:Acid345_0140 DNA internalization-related competence protein ComEC/Rec2.
  
  
 0.527
Acid_5172
PFAM: peptidase A24A, prepilin type IV; peptidase A24A domain protein; KEGG: aba:Acid345_1591 peptidase A24A-like.
  
  
 0.491
Acid_2400
TIGRFAM: DNA protecting protein DprA; PFAM: SMF family protein; KEGG: aba:Acid345_3341 DNA processing protein DprA, putative.
  
  
 0.457
Acid_2374
Hypothetical protein; KEGG: ttj:TTHA1326 cytochrome c-552 like protein.
   
  
 0.416
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.