STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Acid_6925KEGG: aba:Acid345_4239 nickel-dependent hydrogenase, membrane protein. (416 aa)    
Predicted Functional Partners:
Acid_0490
PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: aba:Acid345_3003 Fe-S-cluster-containing hydrogenase.
  
 
 0.976
Acid_6924
PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: aba:Acid345_4238 Fe-S-cluster-containing hydrogenase.
 
 0.971
Acid_6923
KEGG: aba:Acid345_4237 hydrogenase (NiFe) small subunit (HydA); TIGRFAM: hydrogenase (NiFe) small subunit HydA; PFAM: NADH ubiquinone oxidoreductase, 20 kDa subunit; Nickel-iron dehydrogenase small subunit, N-terminal domain protein.
 
  
 0.933
Acid_6926
PFAM: nickel-dependent hydrogenase, large subunit; KEGG: aba:Acid345_4240 nickel-dependent hydrogenase, large subunit; Belongs to the [NiFe]/[NiFeSe] hydrogenase large subunit family.
 
  
 0.930
Acid_6927
TIGRFAM: hydrogenase maturation protease; PFAM: peptidase M52, hydrogen uptake protein; KEGG: ade:Adeh_0477 peptidase M52, hydrogen uptake protein.
 
  
 0.886
Acid_4204
PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: aba:Acid345_2601 4Fe-4S ferredoxin, iron-sulfur binding.
 
 0.885
Acid_0401
Anaerobic dehydrogenases typically selenocysteine-containing-like protein; KEGG: dvu:DVU0694 molybdopterin oxidoreductase, molybdopterin-binding subunit, putative; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
 
 
 0.807
Acid_0838
Formate dehydrogenase; PFAM: molybdopterin oxidoreductase Fe4S4 region; KEGG: bur:Bcep18194_B2101 molybdopterin oxidoreductase.
 
 
 0.768
Acid_0837
KEGG: bpm:BURPS1710b_A0730 formate dehydrogenase, alpha subunit; TIGRFAM: formate dehydrogenase, alpha subunit; PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
 
 
 0.763
Acid_0400
PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: dde:Dde_2934 molybdopterin oxidoreductase, iron-sulfur cluster-binding subunit, putative.
 
 
 0.725
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
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