STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Acid_6926PFAM: nickel-dependent hydrogenase, large subunit; KEGG: aba:Acid345_4240 nickel-dependent hydrogenase, large subunit; Belongs to the [NiFe]/[NiFeSe] hydrogenase large subunit family. (566 aa)    
Predicted Functional Partners:
Acid_6923
KEGG: aba:Acid345_4237 hydrogenase (NiFe) small subunit (HydA); TIGRFAM: hydrogenase (NiFe) small subunit HydA; PFAM: NADH ubiquinone oxidoreductase, 20 kDa subunit; Nickel-iron dehydrogenase small subunit, N-terminal domain protein.
 0.999
Acid_6555
PFAM: NADH ubiquinone oxidoreductase, 20 kDa subunit; KEGG: sma:SAV7366 putative cytochrome C3-like hydrogenase (NiFeSe) small chain.
 
 0.998
Acid_6927
TIGRFAM: hydrogenase maturation protease; PFAM: peptidase M52, hydrogen uptake protein; KEGG: ade:Adeh_0477 peptidase M52, hydrogen uptake protein.
 
 
 0.970
Acid_6925
KEGG: aba:Acid345_4239 nickel-dependent hydrogenase, membrane protein.
 
  
 0.930
Acid_6556
Hydrogen:quinone oxidoreductase; PFAM: nickel-dependent hydrogenase, large subunit; KEGG: sma:SAV7367 putative cytochrome C3-like hydrogenase (NiFeSe) large chain.
  
  
 
0.914
Acid_5016
PFAM: NADH ubiquinone oxidoreductase, 20 kDa subunit; KEGG: dps:DP2211 hydrogenase, small chain.
  
 
 0.899
Acid_6996
PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; pyruvate ferredoxin/flavodoxin oxidoreductase; pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; KEGG: aba:Acid345_0730 pyruvate--ferredoxin (flavodoxin) oxidoreductase.
  
  
 0.877
Acid_6931
Hypothetical protein; KEGG: cte:CT1799 hydrogenase expression/formation protein HupA.
  
 
 0.861
Acid_6924
PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: aba:Acid345_4238 Fe-S-cluster-containing hydrogenase.
 
  
 0.856
Acid_6930
TIGRFAM: hydrogenase expression/formation protein HypE; PFAM: AIR synthase related protein; AIR synthase related protein domain protein; KEGG: rpa:RPA0978 hydrogenase expression/formation protein hypE.
 
   
 0.855
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
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