STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Acid_6938KEGG: aba:Acid345_0531 hypothetical protein. (435 aa)    
Predicted Functional Partners:
Acid_6936
PFAM: glycoside hydrolase, family 3 domain protein; KEGG: cps:CPS_3739 periplasmic beta-glucosidase; Belongs to the glycosyl hydrolase 3 family.
    0.798
Acid_6937
Hypothetical protein.
       0.568
Acid_0885
Glycosyltransferase 36; PFAM: putative carbohydrate binding; glycosyltransferase 36; glycosyltransferase 36 associated; KEGG: dar:Daro_2046 putative carbohydrate binding:glycosyltransferase 36:glycosyltransferase 36 associated.
 
    0.479
Acid_6690
KEGG: aba:Acid345_3330 hypothetical protein.
  
     0.435
Acid_2679
PFAM: glycoside hydrolase, family 3 domain protein; KEGG: ccr:CC3054 xylosidase/arabinosidase; Belongs to the glycosyl hydrolase 3 family.
    0.421
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.