STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Acid_6955KEGG: lic:LIC20209 methylmalonyl-COA mutase large subunit; TIGRFAM: methylmalonyl-CoA mutase, large subunit; PFAM: methylmalonyl-CoA mutase; cobalamin B12-binding domain protein. (715 aa)    
Predicted Functional Partners:
Acid_7059
KEGG: aba:Acid345_2365 LAO/AO transport system ATPase; TIGRFAM: LAO/AO transport system ATPase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; ArgK protein; SMART: AAA ATPase.
  
 0.997
Acid_6957
methylmalonyl-CoA epimerase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: aba:Acid345_3022 glyoxalase/bleomycin resistance protein/dioxygenase.
 
  
 0.996
Acid_6954
TIGRFAM: LAO/AO transport system ATPase; PFAM: ArgK protein; KEGG: mxa:MXAN_2262 LAO/AO transport system ATPase.
  
 0.985
Acid_6956
PFAM: methylmalonyl-CoA mutase; KEGG: lic:LIC20208 methylmalonyl-COA mutase small subunit.
 
 
0.969
sucD
succinyl-CoA synthetase (ADP-forming) alpha subunit; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit.
    
 0.937
sucC
succinyl-CoA synthetase (ADP-forming) beta subunit; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The beta subunit provides nucleotide specificity of the enzyme and binds the substrate succinate, while the binding sites for coenzyme A and phosphate are found in the alpha subunit.
  
 
 0.932
Acid_6046
methylmalonyl-CoA epimerase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: cac:CAC2192 lactoylglutathione lyase, YQJC B.subtilis ortholog.
    
 0.926
Acid_0997
PFAM: AMP-dependent synthetase and ligase; KEGG: reu:Reut_A0648 malonyl-CoA synthase.
    
 0.916
Acid_6953
PFAM: acetyl-CoA hydrolase/transferase; KEGG: bth:BT3193 putative coenzyme A transferase.
 
 
 0.904
Acid_6996
PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; pyruvate ferredoxin/flavodoxin oxidoreductase; pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; KEGG: aba:Acid345_0730 pyruvate--ferredoxin (flavodoxin) oxidoreductase.
    
 0.891
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
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