STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Acid_6959KEGG: aba:Acid345_3024 hypothetical protein. (102 aa)    
Predicted Functional Partners:
Acid_6958
PFAM: biotin/lipoyl attachment domain-containing protein; KEGG: aba:Acid345_3023 biotin/lipoyl attachment.
    
  0.977
Acid_6960
PFAM: carboxyl transferase; KEGG: aba:Acid345_3025 carboxyl transferase.
    
  0.972
Acid_6961
Conserved carboxylase region; PFAM: pyruvate carboxyltransferase; Conserved carboxylase region; KEGG: aba:Acid345_3026 conserved carboxylase region.
    
  0.964
Acid_2261
PFAM: carboxyl transferase; KEGG: aba:Acid345_3025 carboxyl transferase.
    
  0.904
Acid_0680
TIGRFAM: methylmalonate-semialdehyde dehydrogenase; PFAM: aldehyde dehydrogenase; KEGG: tfu:Tfu_0687 methylmalonate-semialdehyde dehydrogenase.
     
  0.900
Acid_6581
KEGG: pfu:PF0973 acetyl-CoA acyltransferase; Belongs to the thiolase-like superfamily. Thiolase family.
     
  0.900
Acid_0177
TIGRFAM: 2-isopropylmalate synthase/homocitrate synthase family protein; PFAM: pyruvate carboxyltransferase; LeuA allosteric (dimerisation) domain; KEGG: pca:Pcar_1007 2-isopropylmalate synthase; Belongs to the alpha-IPM synthase/homocitrate synthase family.
     
  0.800
Acid_0256
PFAM: CoA-binding domain protein; ATP-grasp domain protein; KEGG: nar:Saro_0674 CoA-binding protein.
     
  0.800
Acid_1084
KEGG: tte:TTE1482 phosphotransacetylase; TIGRFAM: phosphate acetyltransferase; PFAM: phosphate acetyl/butaryl transferase.
     
  0.800
Acid_1333
PFAM: aldehyde dehydrogenase; KEGG: rba:RB2579 ethanolamine utilization protein EutE.
     
  0.800
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
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