STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Acid_7068PFAM: oxidoreductase domain protein; KEGG: rba:RB9026 probable NADH-dependent dyhydrogenase. (417 aa)    
Predicted Functional Partners:
Acid_5692
PFAM: protein of unknown function DUF1080; KEGG: sru:SRU_2533 probable secreted glycosyl hydrolase.
  
     0.765
Acid_2627
PFAM: protein of unknown function DUF1080; KEGG: sru:SRU_2533 probable secreted glycosyl hydrolase.
  
     0.761
Acid_0701
PFAM: protein of unknown function DUF1080; KEGG: rba:RB3944 hypothetical protein.
  
     0.754
Acid_6142
PFAM: protein of unknown function DUF1080; KEGG: rba:RB3635 probable secreted glycosyl hydrolase.
  
     0.752
Acid_5955
PFAM: oxidoreductase domain protein; Oxidoreductase, C-terminal domain; KEGG: sso:SSO3049 dehydrogenase, putative.
  
     0.736
Acid_4919
PFAM: protein of unknown function DUF1080; KEGG: rba:RB3944 hypothetical protein.
  
     0.716
Acid_2502
PFAM: protein of unknown function DUF1080; KEGG: sco:SCO7211 secreted glycosyl hydrolase.
  
     0.708
Acid_3185
PFAM: oxidoreductase domain protein; Oxidoreductase, C-terminal domain; KEGG: rba:RB5776 NADH-dependent dehydrogenase.
  
     0.699
Acid_4531
PFAM: protein of unknown function DUF1080; KEGG: rba:RB569 conserved hypothetical protein, putative secreted protein.
  
     0.699
Acid_2457
PFAM: protein of unknown function DUF1080; KEGG: rba:RB6615 probable secreted glycosyl hydrolase.
  
     0.696
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.