STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Acid_7199PFAM: PDZ/DHR/GLGF domain protein; KEGG: sdn:Sden_1685 hypothetical protein. (389 aa)    
Predicted Functional Partners:
rlmN
Radical SAM enzyme, Cfr family; Specifically methylates position 2 of adenine 2503 in 23S rRNA and position 2 of adenine 37 in tRNAs; Belongs to the radical SAM superfamily. RlmN family.
   
   0.790
Acid_2315
PFAM: LmbE family protein; KEGG: mxa:MXAN_6192 hypothetical protein.
  
     0.621
Acid_3222
KEGG: aba:Acid345_1594 hypothetical protein.
  
    0.569
Acid_5256
KEGG: bsu:BG12896 hypothetical protein.
  
     0.561
Acid_7201
PFAM: peptidase M16 domain protein; KEGG: aba:Acid345_1568 peptidase M16-like; Belongs to the peptidase M16 family.
       0.556
Acid_4617
KEGG: aba:Acid345_4433 hypothetical protein.
  
    0.551
Acid_5657
Hypothetical protein.
  
     0.536
Acid_4603
KEGG: aba:Acid345_1594 hypothetical protein.
  
    0.533
Acid_4157
KEGG: ccr:CC0122 hypothetical protein.
  
     0.527
Acid_3723
KEGG: aba:Acid345_1594 hypothetical protein.
  
    0.512
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.