STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Acid_7216KEGG: dar:Daro_0588 hypothetical protein. (100 aa)    
Predicted Functional Partners:
Acid_7217
Hypothetical protein.
     
 0.541
Acid_7218
PFAM: ferredoxin; [2Fe-2S]-binding domain protein; KEGG: aba:Acid345_1931 (2Fe-2S)-binding protein.
   
   0.530
Acid_4122
KEGG: aci:ACIAD2741 hypothetical protein.
   
   0.506
Acid_7219
PFAM: aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead; aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding; KEGG: aba:Acid345_1932 isoquinoline 1-oxidoreductase.
       0.505
Acid_7220
TIGRFAM: cytochrome C family protein; KEGG: rba:RB12393 similar to C-type cytochrome precursor.
     
 0.483
Acid_6424
TIGRFAM: DNA internalization-related competence protein ComEC/Rec2; PFAM: beta-lactamase domain protein; ComEC/Rec2-related protein; KEGG: aba:Acid345_0140 DNA internalization-related competence protein ComEC/Rec2.
  
  
 0.456
Acid_1856
Serine phosphatase; PFAM: Forkhead-associated protein; GAF domain protein; Stage II sporulation E family protein; SMART: protein phosphatase 2C domain protein; KEGG: aba:Acid345_2718 serine phosphatase.
  
  
 0.423
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
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