STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Acid_7249Hypothetical protein. (99 aa)    
Predicted Functional Partners:
Acid_7248
Sulfite dehydrogenase (cytochrome) subunit SorA apoprotein; PFAM: oxidoreductase, molybdopterin binding; Mo-co oxidoreductase dimerisation domain; KEGG: hch:HCH_00101 sulfite oxidase and related enzyme.
       0.773
Acid_7250
PFAM: glutathione peroxidase; Redoxin domain protein; KEGG: bfr:BF3886 glutathione peroxidase; Belongs to the glutathione peroxidase family.
       0.705
Acid_7246
Hypothetical protein.
       0.503
Acid_7247
RNA polymerase, sigma-24 subunit, ECF subfamily; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; KEGG: aba:Acid345_4527 sigma-24, ECF subfamily; Belongs to the sigma-70 factor family. ECF subfamily.
       0.503
Acid_7244
PFAM: PBS lyase HEAT domain protein repeat-containing protein; KEGG: mac:MA4317 phycocyanin alpha phycocyanobilin lyase related protein.
       0.496
Acid_7245
Hypothetical protein; KEGG: hsa:80712 extraembryonic, spermatogenesis, homeobox 1 homolog (mouse).
       0.496
Acid_7251
Hypothetical protein.
       0.492
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
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