STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Acid_7255PFAM: transposase IS3/IS911 family protein. (118 aa)    
Predicted Functional Partners:
Acid_7256
PFAM: Integrase, catalytic region; KEGG: gvi:gll2675 putative transposase.
       0.773
Acid_7257
Hypothetical protein.
       0.773
Acid_7254
TIGRFAM: small GTP-binding protein; GTP-binding protein TypA; PFAM: elongation factor G domain protein; protein synthesis factor, GTP-binding; elongation factor Tu, domain 2 protein; KEGG: aba:Acid345_4404 GTP-binding protein TypA.
       0.556
Acid_7258
PFAM: ROK family protein; KEGG: aba:Acid345_2078 sugar kinase.
       0.402
Acid_7259
PFAM: Aldose 1-epimerase; KEGG: tbd:Tbd_2730 dihydroxy-acid dehydratase; Belongs to the glucose-6-phosphate 1-epimerase family.
       0.402
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.