STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Acid_7289PFAM: Ig family protein; KEGG: rso:RSc0115 putative hemagglutinin-related protein. (1133 aa)    
Predicted Functional Partners:
Acid_2808
Hypothetical protein; KEGG: pfl:PFL_3520 outer membrane autotransporter barrel domain protein.
  
     0.773
Acid_6338
PFAM: Ig family protein; KEGG: rso:RSc0115 putative hemagglutinin-related protein.
  
     0.771
Acid_1616
KEGG: ava:Ava_4941 protein of unknown function DUF11.
  
     0.752
Acid_7288
PFAM: sugar transferase; KEGG: ade:Adeh_2455 undecaprenyl-phosphate galactosephosphotransferase.
  
  
 0.596
pyrE-2
Phosphoribosyltransferase; Catalyzes the transfer of a ribosyl phosphate group from 5- phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP).
       0.538
Acid_2823
KEGG: aba:Acid345_2156 amino acid transporters.
  
     0.437
Acid_4619
KEGG: aba:Acid345_2156 amino acid transporters.
  
     0.423
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.