STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Acid_7292KEGG: rba:RB11948 probable secreted protein, putative xanthan lyase related. (547 aa)    
Predicted Functional Partners:
Acid_1265
PFAM: Squalene/phytoene synthase; KEGG: aba:Acid345_1745 squalene/phytoene synthase.
  
  
 0.737
Acid_1266
Farnesyl-diphosphate farnesyltransferase; PFAM: Squalene/phytoene synthase; KEGG: aba:Acid345_1746 squalene/phytoene synthase.
  
  
 0.737
Acid_7290
Putative transmembrane anti-sigma factor; KEGG: aba:Acid345_2694 hypothetical protein.
       0.686
Acid_7291
RNA polymerase, sigma-24 subunit, ECF subfamily; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; KEGG: aba:Acid345_2693 sigma-24, ECF subfamily; Belongs to the sigma-70 factor family. ECF subfamily.
       0.686
Acid_1801
KEGG: rba:RB6799 hypothetical protein-transmembrane prediction.
  
     0.676
Acid_2874
KEGG: rba:RB6799 hypothetical protein-transmembrane prediction.
  
     0.675
Acid_7102
KEGG: rba:RB609 conserved hypothetical protein, putative xylan esterase.
  
     0.645
Acid_3533
KEGG: rba:RB6799 hypothetical protein-transmembrane prediction.
  
     0.643
Acid_7293
KEGG: aba:Acid345_1711 hypothetical protein.
       0.618
Acid_6091
KEGG: rba:RB609 conserved hypothetical protein, putative xylan esterase.
  
    0.614
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
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