STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Acid_7386KEGG: bfs:BF3960 putative transmembrane protein. (179 aa)    
Predicted Functional Partners:
Acid_7385
KEGG: zmo:ZMO0445 hypothetical protein.
     0.980
Acid_7384
PFAM: membrane bound O-acyl transferase, MBOAT family protein; KEGG: bth:BT2681 alginate O-acetylation protein; Belongs to the membrane-bound acyltransferase family.
 
    0.931
Acid_1177
PFAM: deoxyhypusine synthase; KEGG: ava:Ava_1896 deoxyhypusine synthase-like protein.
  
     0.624
Acid_5744
KEGG: rba:RB7502 hypothetical protein.
  
     0.621
Acid_1100
PFAM: membrane bound O-acyl transferase, MBOAT family protein; KEGG: hch:HCH_04167 predicted membrane protein involved in D-alanine export; Belongs to the membrane-bound acyltransferase family.
 
    0.617
Acid_7383
KEGG: sru:SRU_2528 Tat (twin-arginine translocation) pathway signal sequence domain protein.
       0.603
Acid_7382
PFAM: glucose-methanol-choline oxidoreductase; KEGG: sru:SRU_2529 GMC oxidoreductase family.
       0.591
Acid_6043
PFAM: membrane bound O-acyl transferase, MBOAT family protein; KEGG: gme:Gmet_2338 membrane bound O-acyl transferase, MBOAT; Belongs to the membrane-bound acyltransferase family.
 
    0.580
Acid_7387
KEGG: cvi:CV4064 hypothetical protein.
 
    
0.541
Acid_6436
PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: rba:RB8167 hypothetical protein.
 
    0.532
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
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