STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Acid_7530Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; Cupin 2, conserved barrel domain protein; KEGG: aba:Acid345_3046 transcriptional regulator, XRE family with cupin sensor domain. (198 aa)    
Predicted Functional Partners:
Acid_5151
Transcriptional regulator, GntR family; PFAM: regulatory protein GntR, HTH; regulatory protein, DeoR; iron dependent repressor; UbiC transcription regulator-associated domain protein; KEGG: gka:GK2275 transcriptional regulator (GntR family).
  
  
 0.733
Acid_2061
PFAM: HipA domain protein; KEGG: neu:NE1310 possible HipA protein.
  
 
 0.683
Acid_7529
PFAM: beta-Ig-H3/fasciclin; KEGG: bja:bll5191 hypothetical protein.
       0.537
Acid_7528
PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; NmrA family protein; Male sterility C-terminal domain; KEGG: sco:SCO0841 oxidoreductase.
       0.525
Acid_4447
Peptidase C26; PFAM: glutamine amidotransferase class-I; peptidase C26; KEGG: oih:OB0725 hypothetical protein.
  
  
 0.518
cobB
PFAM: Silent information regulator protein Sir2; KEGG: aae:aq_2170 hypothetical protein; Belongs to the sirtuin family. Class III subfamily.
  
    0.500
Acid_1972
PFAM: beta-ketoacyl synthase; acyl transferase domain protein; short-chain dehydrogenase/reductase SDR; 2-nitropropane dioxygenase, NPD; KR; KEGG: fra:Francci3_0926 beta-ketoacyl synthase.
   
 
 0.476
Acid_2068
Transcriptional regulator, GntR family; PFAM: regulatory protein GntR, HTH; periplasmic binding protein/LacI transcriptional regulator; KEGG: lla:L0146 transcription regulator.
  
  
 0.473
Acid_7342
Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein, AraC type; KEGG: bur:Bcep18194_C7695 transcriptional regulator, AraC family.
 
 
 0.466
Acid_2370
PFAM: extracellular solute-binding protein, family 1; KEGG: rxy:Rxyl_2913 extracellular solute-binding protein, family 1.
 
   
 0.448
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.