STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Acid_7543Periplasmic component of the Tol biopolymer transport system-like protein; KEGG: sme:SMc00162 hypothetical protein. (507 aa)    
Predicted Functional Partners:
Acid_7544
PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; Male sterility C-terminal domain; KEGG: aba:Acid345_0895 NAD-dependent epimerase/dehydratase.
       0.618
Acid_7648
KEGG: ape:APE0340 hypothetical protein.
  
     0.617
Acid_2616
KEGG: mes:Meso_2409 hypothetical protein.
  
     0.582
Acid_0512
PFAM: WD40 domain protein beta Propeller; KEGG: aba:Acid345_0592 TolB-like protein.
  
     0.561
Acid_4012
KEGG: bth:BT0997 hypothetical protein.
  
    0.557
Acid_6550
UTP--glucose-1-phosphate uridylyltransferase-like protein; KEGG: rba:RB9096 similar to UTP--glucose-1-phosphate uridylyltransferase.
  
     0.542
Acid_3595
PFAM: DinB family protein; KEGG: aba:Acid345_3332 hypothetical protein.
  
     0.531
Acid_1593
PFAM: ASPIC/UnbV domain protein; Tetratricopeptide TPR_2 repeat protein; FG-GAP repeat protein; SMART: Tetratricopeptide domain protein; KEGG: aba:Acid345_0824 ASPIC/UnbV.
 
  
 0.517
Acid_3742
PFAM: alpha-L-rhamnosidase; alpha-L-rhamnosidase N-terminal domain protein; KEGG: aor:AO090012000058 predicted protein Pfam: Glyco_hydro_2_N Bac_rhamnosid_N Bac_rhamnosid.
  
     0.511
Acid_7545
PFAM: NADPH-dependent FMN reductase; flavodoxin/nitric oxide synthase; KEGG: sat:SYN_00084 multimeric flavodoxin.
       0.508
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
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