STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Acid_7594KEGG: sme:SMa1579 hypothetical protein. (469 aa)    
Predicted Functional Partners:
Acid_7595
PFAM: TadE family protein.
  
    0.606
Acid_7596
PFAM: TadE family protein.
       0.590
Acid_1410
PFAM: type II and III secretion system protein; transport-associated; KEGG: nar:Saro_1516 type II and III secretion system protein; Belongs to the bacterial secretin family.
 
  
 0.585
Acid_7752
PFAM: type II and III secretion system protein; KEGG: dde:Dde_2360 type II/III secretion system protein; Belongs to the bacterial secretin family.
 
  
 0.572
Acid_4605
PFAM: Cna B domain protein; KEGG: aba:Acid345_2674 hypothetical protein.
  
     0.548
Acid_5637
PFAM: transcriptional regulator PadR family protein; KEGG: mlo:mll2486 hypothetical protein.
  
     0.478
Acid_2972
KEGG: aba:Acid345_1711 hypothetical protein.
  
     0.469
Acid_0204
KEGG: aba:Acid345_0376 glycogen debranching enzyme-like.
  
     0.440
Acid_3489
KEGG: mlo:mlr2793 hypothetical protein.
  
     0.429
Acid_7748
Response regulator receiver protein; KEGG: rba:RB5175 probable pilus assembly protein CpaE.
 
  
 0.427
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
Server load: low (6%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.