STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Acid_7624PFAM: protein kinase; SMART: tyrosine protein kinase; serine/threonine protein kinase; KEGG: aba:Acid345_4049 serine/threonine protein kinase with TPR repeats. (466 aa)    
Predicted Functional Partners:
Acid_7625
RNA polymerase, sigma-24 subunit, ECF subfamily; PFAM: sigma-70 region 4 domain protein; sigma factor, ECF family protein; Sigma-70, region 4 type 2; KEGG: gvi:gll4071 hypothetical protein.
 
 
   0.850
Acid_1311
Transcriptional regulator, Fis family; PFAM: protein phosphatase 2C domain protein; Stage II sporulation E family protein; KEGG: mta:Moth_0909 protein serine/threonine phosphatases.
  
   0.784
Acid_4313
PFAM: protein phosphatase 2C domain protein; Stage II sporulation E family protein; KEGG: bld:BLi01797 protein phosphatase; RBL04052.
  
   0.780
Acid_3274
PFAM: protein phosphatase 2C domain protein; KEGG: mta:Moth_0909 protein serine/threonine phosphatases.
  
   0.779
Acid_7519
PFAM: protein phosphatase 2C domain protein; KEGG: cya:CYA_0212 protein phosphatase 2C family protein.
  
   0.777
Acid_7623
KEGG: mac:MA3293 hypothetical protein.
       0.773
Acid_4243
SMART: serine/threonine protein kinase; KEGG: aba:Acid345_4118 serine/threonine protein kinase.
  
     0.772
Acid_2015
KEGG: aba:Acid345_4390 serine/threonine protein kinase.
  
     0.753
Acid_7677
RNA polymerase, sigma-24 subunit, ECF subfamily; PFAM: sigma-70 region 4 domain protein; sigma factor, ECF family protein; Sigma-70, region 4 type 2; KEGG: gvi:gll4071 hypothetical protein.
 
 
   0.718
Acid_0870
PFAM: sigma factor, ECF family protein; KEGG: aba:Acid345_4048 sigma-24, ECF subfamily; Belongs to the sigma-70 factor family.
 
 
   0.716
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.