STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Acid_7668PFAM: GAF domain protein; KEGG: pca:Pcar_2313 putative GAF sensor protein. (199 aa)    
Predicted Functional Partners:
Acid_7669
PFAM: glycosyl hydrolase, BNR repeat-containing protein; KEGG: sth:STH291 hypothetical protein.
 
     0.801
Acid_0761
PFAM: Uroporphyrinogen III synthase HEM4; KEGG: rba:RB7803 uroporphyrinogen III synthase, uroporhyrinogen decarboxylase.
      0.797
Acid_0188
PFAM: Uroporphyrinogen III synthase HEM4; KEGG: rba:RB7803 uroporphyrinogen III synthase, uroporhyrinogen decarboxylase.
      0.611
Acid_7667
PFAM: Mov34/MPN/PAD-1 family protein; KEGG: bbr:BB1438 DNA polymerase III subunit Tau.
       0.557
Acid_0911
PFAM: surface antigen variable number repeat protein; KEGG: aba:Acid345_0248 surface antigen (D15).
  
     0.443
Acid_3192
KEGG: aba:Acid345_0073 DNA uptake lipoprotein-like.
  
     0.413
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.