STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Acid_7745PFAM: type II secretion system protein; KEGG: nmu:Nmul_A2352 type II secretion system protein. (312 aa)    
Predicted Functional Partners:
Acid_7746
PFAM: type II secretion system protein; KEGG: reu:Reut_A2648 type II secretion system protein.
 
  
 0.985
Acid_7747
PFAM: type II secretion system protein E; KEGG: rba:RB5940 secretion system protein TadA.
 
  
 0.969
Acid_7753
PFAM: SAF domain; KEGG: plt:Plut_0800 pilus assembly protein CpaB.
 
  
 0.964
Acid_7748
Response regulator receiver protein; KEGG: rba:RB5175 probable pilus assembly protein CpaE.
 
  
 0.952
Acid_7752
PFAM: type II and III secretion system protein; KEGG: dde:Dde_2360 type II/III secretion system protein; Belongs to the bacterial secretin family.
 
  
 0.942
Acid_1413
PFAM: type II secretion system protein; KEGG: bur:Bcep18194_C7194 Flp pilus assembly protein TadB.
 
  
 0.941
Acid_4159
PFAM: type II secretion system protein; KEGG: pol:Bpro_2556 type II secretion system protein.
 
  
 0.941
Acid_1409
PFAM: SAF domain; KEGG: eba:ebA3714 pilus assembly transmembrane protein.
 
  
 0.915
Acid_4161
PFAM: SAF domain; KEGG: eba:ebA3714 pilus assembly transmembrane protein.
 
  
 0.915
Acid_1411
Response regulator receiver protein; KEGG: ade:Adeh_2826 Flp pilus assembly protein ATPase CpaE-like.
 
  
 0.879
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.