STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Acid_7764PFAM: oxidoreductase domain protein; KEGG: rba:RB6858 hypothetical oxidoreductase. (314 aa)    
Predicted Functional Partners:
Acid_6964
KEGG: rba:RB5300 hypothetical protein-signal peptide and transmembrane prediction.
  
     0.770
Acid_0710
KEGG: rba:RB7999 hypothetical protein; Belongs to the DapA family.
  
    0.749
Acid_0711
PFAM: NAD-dependent epimerase/dehydratase; KEGG: rba:RB7998 hypothetical protein.
  
    0.743
Acid_4275
KEGG: rba:RB4014 probable acetyl xylan esterase.
  
     0.728
Acid_1336
KEGG: rba:RB11762 probable streptomycin biosynthesis protein StrI.
  
     0.726
Acid_0027
PFAM: Xylose isomerase domain protein TIM barrel; KEGG: oih:OB3419 hypothetical protein.
  
    0.715
Acid_2075
KEGG: rba:RB7871 hypothetical protein-signal peptide and transmembrane prediction.
  
    0.715
Acid_6537
KEGG: rba:RB11994 conserved hypothetical protein, putative secreted protein.
  
     0.714
Acid_1749
KEGG: rba:RB4014 probable acetyl xylan esterase.
  
     0.703
Acid_6090
KEGG: rba:RB609 conserved hypothetical protein, putative xylan esterase.
  
     0.692
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
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