STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Acid_7856Primary replicative DNA helicase; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity. Belongs to the helicase family. DnaB subfamily. (454 aa)    
Predicted Functional Partners:
dnaG
DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication.
 0.978
dnaA
Chromosomal replication initiator protein DnaA; Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication; it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box): 5'- TTATC[CA]A[CA]A-3'. DnaA binds to ATP and to acidic phospholipids. Belongs to the DnaA family.
 
 
 
 0.920
Acid_6865
Hypothetical protein.
  
 
 0.899
Acid_7331
DNA polymerase III, delta prime subunit; SMART: AAA ATPase; KEGG: aba:Acid345_1189 DNA-directed DNA polymerase.
 
 
 
 0.838
Acid_7604
PFAM: Chromosomal replication initiator, DnaA C-terminal domain; KEGG: sal:Sala_0001 chromosomal replication initiator protein DnaA.
   
 
 0.826
dnaX
DNA polymerase III, subunits gamma and tau; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity.
 
 
 
 0.792
Acid_0624
PFAM: IstB domain protein ATP-binding protein; KEGG: dge:Dgeo_2537 IstB-like ATP-binding protein.
  
 
 0.773
Acid_0646
PFAM: IstB domain protein ATP-binding protein; KEGG: mta:Moth_2240 IstB-like ATP-binding protein.
  
 
 0.773
Acid_1996
SMART: AAA ATPase; KEGG: aba:Acid345_0060 DNA replication protein, DnaC-like.
  
 
 0.773
Acid_2949
PFAM: IstB domain protein ATP-binding protein; SMART: AAA ATPase; KEGG: eba:p1B4 IstB transposition helper protein.
  
 
 0.773
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
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