STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Acid_7922PFAM: glycosyl transferase, family 2; KEGG: aba:Acid345_2904 glycosyl transferase, family 2. (535 aa)    
Predicted Functional Partners:
Acid_4430
PFAM: TPR repeat-containing protein; polysaccharide deacetylase; peptidase C14, caspase catalytic subunit p20; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: aba:Acid345_0287 polysaccharide deacetylase.
  
 
 0.571
Acid_6506
KEGG: ade:Adeh_1237 hypothetical protein.
  
     0.560
Acid_3666
KEGG: ade:Adeh_1237 hypothetical protein.
  
     0.534
Acid_7853
PFAM: Creatininase; KEGG: hma:pNG7096 creatinine amidohydrolase.
  
  
 0.530
Acid_7926
Transcriptional regulator, MarR family; PFAM: regulatory protein, MarR; KEGG: reu:Reut_C6203 regulatory protein, MarR.
  
    0.526
Acid_7923
PFAM: amidohydrolase; Amidohydrolase 3; KEGG: aba:Acid345_1826 amidohydrolase.
       0.519
Acid_7924
Hypothetical protein.
       0.519
Acid_7925
KEGG: lic:LIC10604 hypothetical protein.
       0.519
acsA
Acetyl-coenzyme A synthetase; Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA; Belongs to the ATP-dependent AMP-binding enzyme family.
     
 0.408
Acid_0745
PFAM: polysaccharide deacetylase; KEGG: bha:BH1917 chitooligosaccharide deacetylase.
  
  
 0.401
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
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