STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEH54392.1Putative conjugative transfer protein TraD. (181 aa)    
Predicted Functional Partners:
SEH54406.1
Putative conjugative transfer protein TraD_F.
     0.994
SEH54378.1
IncW plasmid conjugative relaxase protein TrwC(TraI homolog).
 
     0.850
SEH65222.1
HNH nuclease.
   
 
 0.783
SEH54364.1
TraI.
 
     0.768
SEH54444.1
IncF plasmid conjugative transfer pilusassembly protein TraU.
 
     0.761
SEH54468.1
IncF plasmid conjugative transfer protein TraN.
 
     0.697
SEH54419.1
Glutaredoxin.
 
     0.649
SEH54542.1
IncF plasmid conjugative transfer pilusassembly protein TraB.
 
     0.619
SEH54352.1
IncF plasmid conjugative transfer pilusassembly protein TraH.
 
     0.586
SEH54456.1
Conserved hypothetical cytosolic protein.
 
     0.540
Your Current Organism:
Bathymodiolus azoricus
NCBI taxonomy Id: 235205
Other names: B. azoricus thioautotrophic gill symbiont, Bathymodiolus azoricus thioautotrophic gill symbiont
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