STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HH_1214Conserved hypothetical protein; Similar to Bacillus halodurans BH0835. (335 aa)    
Predicted Functional Partners:
HH_1212
Conserved hypothetical protein; Similar to Pseudomonas aeruginosa PA3954.
 
     0.902
HH_1215
Conserved hypothetical protein; Similar to Pseudomonas aeruginosa PA2326.
 
     0.895
HH_1416
Conserved hypothetical protein; Similar to Campylobacter jejuni CJ1112c.
   
  
 0.469
bioD
Dethiobiotin synthetase; Catalyzes a mechanistically unusual reaction, the ATP- dependent insertion of CO2 between the N7 and N8 nitrogen atoms of 7,8- diaminopelargonic acid (DAPA) to form an ureido ring.
       0.440
HH_0797
Conserved hypothetical protein; Possible SNF2 family helicase.
      
 0.426
Your Current Organism:
Helicobacter hepaticus
NCBI taxonomy Id: 235279
Other names: H. hepaticus ATCC 51449, Helicobacter hepaticus ATCC 51449, Helicobacter hepaticus str. ATCC 51449
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.