Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
HH_1764 | HH_1765 | HH_1764 | HH_1765 | Conserved hypothetical protein; Similar to Campylobacter jejuni CJ0067; predicted hydrolase. | Conserved hypothetical protein; Similar to Helicobacter pylori HP0983; predicted membrane-associated. | 0.833 |
HH_1764 | ccdA | HH_1764 | HH_1767 | Conserved hypothetical protein; Similar to Campylobacter jejuni CJ0067; predicted hydrolase. | Cytochrome c biogenesis protein CcdA. | 0.833 |
HH_1764 | pyrC_1 | HH_1764 | HH_1766 | Conserved hypothetical protein; Similar to Campylobacter jejuni CJ0067; predicted hydrolase. | Dihydroorotase. | 0.857 |
HH_1764 | pyrC_2 | HH_1764 | HH_0614 | Conserved hypothetical protein; Similar to Campylobacter jejuni CJ0067; predicted hydrolase. | Dihydroorotase; Catalyzes the reversible cyclization of carbamoyl aspartate to dihydroorotate. | 0.548 |
HH_1765 | HH_1764 | HH_1765 | HH_1764 | Conserved hypothetical protein; Similar to Helicobacter pylori HP0983; predicted membrane-associated. | Conserved hypothetical protein; Similar to Campylobacter jejuni CJ0067; predicted hydrolase. | 0.833 |
HH_1765 | ccdA | HH_1765 | HH_1767 | Conserved hypothetical protein; Similar to Helicobacter pylori HP0983; predicted membrane-associated. | Cytochrome c biogenesis protein CcdA. | 0.833 |
HH_1765 | pyrC_1 | HH_1765 | HH_1766 | Conserved hypothetical protein; Similar to Helicobacter pylori HP0983; predicted membrane-associated. | Dihydroorotase. | 0.833 |
carA | carB | HH_0888 | HH_1688 | Carbamoylphosphate synthase small subunit; Belongs to the CarA family. | Carbamoylphosphate synthase; Large subunit; Belongs to the CarB family. | 0.999 |
carA | pyrB | HH_0888 | HH_0521 | Carbamoylphosphate synthase small subunit; Belongs to the CarA family. | Aspartate carbamoyltransferase; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. ATCase family. | 0.999 |
carA | pyrC_1 | HH_0888 | HH_1766 | Carbamoylphosphate synthase small subunit; Belongs to the CarA family. | Dihydroorotase. | 0.939 |
carA | pyrC_2 | HH_0888 | HH_0614 | Carbamoylphosphate synthase small subunit; Belongs to the CarA family. | Dihydroorotase; Catalyzes the reversible cyclization of carbamoyl aspartate to dihydroorotate. | 0.594 |
carA | pyrD | HH_0888 | HH_1624 | Carbamoylphosphate synthase small subunit; Belongs to the CarA family. | Dihydroorotate dehydrogenase; Catalyzes the conversion of dihydroorotate to orotate with quinone as electron acceptor; Belongs to the dihydroorotate dehydrogenase family. Type 2 subfamily. | 0.937 |
carA | pyrE | HH_0888 | HH_1355 | Carbamoylphosphate synthase small subunit; Belongs to the CarA family. | Orotate phosphoribosyltransferase; Catalyzes the transfer of a ribosyl phosphate group from 5- phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP). | 0.902 |
carA | pyrF | HH_0888 | HH_0036 | Carbamoylphosphate synthase small subunit; Belongs to the CarA family. | Orotidine-5'-phosphate decarboxylase; Catalyzes the decarboxylation of orotidine 5'-monophosphate (OMP) to uridine 5'-monophosphate (UMP). | 0.903 |
carB | carA | HH_1688 | HH_0888 | Carbamoylphosphate synthase; Large subunit; Belongs to the CarB family. | Carbamoylphosphate synthase small subunit; Belongs to the CarA family. | 0.999 |
carB | pyrB | HH_1688 | HH_0521 | Carbamoylphosphate synthase; Large subunit; Belongs to the CarB family. | Aspartate carbamoyltransferase; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. ATCase family. | 0.999 |
carB | pyrC_1 | HH_1688 | HH_1766 | Carbamoylphosphate synthase; Large subunit; Belongs to the CarB family. | Dihydroorotase. | 0.944 |
carB | pyrC_2 | HH_1688 | HH_0614 | Carbamoylphosphate synthase; Large subunit; Belongs to the CarB family. | Dihydroorotase; Catalyzes the reversible cyclization of carbamoyl aspartate to dihydroorotate. | 0.670 |
carB | pyrD | HH_1688 | HH_1624 | Carbamoylphosphate synthase; Large subunit; Belongs to the CarB family. | Dihydroorotate dehydrogenase; Catalyzes the conversion of dihydroorotate to orotate with quinone as electron acceptor; Belongs to the dihydroorotate dehydrogenase family. Type 2 subfamily. | 0.944 |
carB | pyrE | HH_1688 | HH_1355 | Carbamoylphosphate synthase; Large subunit; Belongs to the CarB family. | Orotate phosphoribosyltransferase; Catalyzes the transfer of a ribosyl phosphate group from 5- phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP). | 0.924 |
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