STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GK0888Transposase. (555 aa)    
Predicted Functional Partners:
GK0887
Hypothetical conserved protein.
 
     0.650
GK0879
Hypothetical conserved protein.
  
     0.574
GK3281
Hypothetical conserved protein.
  
     0.470
GK2912
Hypothetical conserved protein.
  
     0.420
GK0779
Hypothetical conserved protein.
  
     0.418
GK1915
Hypothetical conserved protein.
  
     0.418
GK1415
Hypothetical protein.
  
     0.416
GK3260
Hypothetical protein.
  
     0.412
Your Current Organism:
Geobacillus kaustophilus
NCBI taxonomy Id: 235909
Other names: G. kaustophilus HTA426, Geobacillus kaustophilus HTA426
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.