Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
GK0100 | GK0983 | GK0100 | GK0983 | Ribosomal protein (L7AE family); Belongs to the eukaryotic ribosomal protein eL8 family. | Hypothetical protein. | 0.925 |
GK0100 | GK1173 | GK0100 | GK1173 | Ribosomal protein (L7AE family); Belongs to the eukaryotic ribosomal protein eL8 family. | RNA-binding Sun protein; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA. | 0.594 |
GK0100 | GK2225 | GK0100 | GK2225 | Ribosomal protein (L7AE family); Belongs to the eukaryotic ribosomal protein eL8 family. | 30S ribosomal protein S1. | 0.827 |
GK0100 | guaA | GK0100 | GK0254 | Ribosomal protein (L7AE family); Belongs to the eukaryotic ribosomal protein eL8 family. | GMP synthetase (glutamine amidotransferase); Catalyzes the synthesis of GMP from XMP. | 0.449 |
GK0100 | infB | GK0100 | GK1263 | Ribosomal protein (L7AE family); Belongs to the eukaryotic ribosomal protein eL8 family. | Translation initiation factor IF-2; One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. IF-2 subfamily. | 0.925 |
GK0100 | nusA | GK0100 | GK1260 | Ribosomal protein (L7AE family); Belongs to the eukaryotic ribosomal protein eL8 family. | Transcription termination-antitermination factor; Participates in both transcription termination and antitermination. | 0.814 |
GK0100 | rpsO | GK0100 | GK1268 | Ribosomal protein (L7AE family); Belongs to the eukaryotic ribosomal protein eL8 family. | 30S ribosomal protein S15; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it helps nucleate assembly of the platform of the 30S subunit by binding and bridging several RNA helices of the 16S rRNA. | 0.974 |
GK0100 | truB | GK0100 | GK1266 | Ribosomal protein (L7AE family); Belongs to the eukaryotic ribosomal protein eL8 family. | tRNA pseudouridine 5S synthase; Responsible for synthesis of pseudouridine from uracil-55 in the psi GC loop of transfer RNAs; Belongs to the pseudouridine synthase TruB family. Type 1 subfamily. | 0.958 |
GK0983 | GK0100 | GK0983 | GK0100 | Hypothetical protein. | Ribosomal protein (L7AE family); Belongs to the eukaryotic ribosomal protein eL8 family. | 0.925 |
GK0983 | GK1173 | GK0983 | GK1173 | Hypothetical protein. | RNA-binding Sun protein; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA. | 0.427 |
GK0983 | GK1262 | GK0983 | GK1262 | Hypothetical protein. | Ribosomal protein (L7AE family). | 0.925 |
GK0983 | GK2225 | GK0983 | GK2225 | Hypothetical protein. | 30S ribosomal protein S1. | 0.677 |
GK0983 | guaA | GK0983 | GK0254 | Hypothetical protein. | GMP synthetase (glutamine amidotransferase); Catalyzes the synthesis of GMP from XMP. | 0.696 |
GK0983 | nusA | GK0983 | GK1260 | Hypothetical protein. | Transcription termination-antitermination factor; Participates in both transcription termination and antitermination. | 0.831 |
GK0983 | rbfA | GK0983 | GK1265 | Hypothetical protein. | Ribosome-binding factor A; One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA. | 0.831 |
GK0983 | rpsO | GK0983 | GK1268 | Hypothetical protein. | 30S ribosomal protein S15; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it helps nucleate assembly of the platform of the 30S subunit by binding and bridging several RNA helices of the 16S rRNA. | 0.908 |
GK0983 | truB | GK0983 | GK1266 | Hypothetical protein. | tRNA pseudouridine 5S synthase; Responsible for synthesis of pseudouridine from uracil-55 in the psi GC loop of transfer RNAs; Belongs to the pseudouridine synthase TruB family. Type 1 subfamily. | 0.849 |
GK1173 | GK0100 | GK1173 | GK0100 | RNA-binding Sun protein; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA. | Ribosomal protein (L7AE family); Belongs to the eukaryotic ribosomal protein eL8 family. | 0.594 |
GK1173 | GK0983 | GK1173 | GK0983 | RNA-binding Sun protein; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA. | Hypothetical protein. | 0.427 |
GK1173 | GK1262 | GK1173 | GK1262 | RNA-binding Sun protein; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA. | Ribosomal protein (L7AE family). | 0.645 |
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