Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| GK1189 | era | GK1189 | GK2488 | Malonyl CoA-acyl carrier protein transacylase. | GTP-binding protein; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism. | 0.764 |
| GK1189 | rpsF | GK1189 | GK3482 | Malonyl CoA-acyl carrier protein transacylase. | 30S ribosomal protein S6 (BS9); Binds together with S18 to 16S ribosomal RNA. | 0.872 |
| GK1189 | rpsG | GK1189 | GK0102 | Malonyl CoA-acyl carrier protein transacylase. | 30S ribosomal protein S7 (BS7); One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family. | 0.784 |
| GK1189 | rpsI | GK1189 | GK0140 | Malonyl CoA-acyl carrier protein transacylase. | 30S ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family. | 0.778 |
| GK1189 | rpsP | GK1189 | GK1197 | Malonyl CoA-acyl carrier protein transacylase. | 30S ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family. | 0.945 |
| GK1189 | rsmA | GK1189 | GK0035 | Malonyl CoA-acyl carrier protein transacylase. | Dimethyladenosine transferase; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits. | 0.700 |
| GK2489 | GK2493 | GK2489 | GK2493 | Cytidine deaminase; This enzyme scavenges exogenous and endogenous cytidine and 2'-deoxycytidine for UMP synthesis; Belongs to the cytidine and deoxycytidylate deaminase family. | Phosphate starvation-induced protein. | 0.736 |
| GK2489 | era | GK2489 | GK2488 | Cytidine deaminase; This enzyme scavenges exogenous and endogenous cytidine and 2'-deoxycytidine for UMP synthesis; Belongs to the cytidine and deoxycytidylate deaminase family. | GTP-binding protein; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism. | 0.950 |
| GK2489 | recO | GK2489 | GK2486 | Cytidine deaminase; This enzyme scavenges exogenous and endogenous cytidine and 2'-deoxycytidine for UMP synthesis; Belongs to the cytidine and deoxycytidylate deaminase family. | DNA repair protein (recombination protein O); Involved in DNA repair and RecF pathway recombination. | 0.643 |
| GK2489 | ybeY | GK2489 | GK2491 | Cytidine deaminase; This enzyme scavenges exogenous and endogenous cytidine and 2'-deoxycytidine for UMP synthesis; Belongs to the cytidine and deoxycytidylate deaminase family. | Hypothetical conserved protein; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA. | 0.969 |
| GK2493 | GK2489 | GK2493 | GK2489 | Phosphate starvation-induced protein. | Cytidine deaminase; This enzyme scavenges exogenous and endogenous cytidine and 2'-deoxycytidine for UMP synthesis; Belongs to the cytidine and deoxycytidylate deaminase family. | 0.736 |
| GK2493 | era | GK2493 | GK2488 | Phosphate starvation-induced protein. | GTP-binding protein; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism. | 0.749 |
| GK2493 | recO | GK2493 | GK2486 | Phosphate starvation-induced protein. | DNA repair protein (recombination protein O); Involved in DNA repair and RecF pathway recombination. | 0.854 |
| GK2493 | ybeY | GK2493 | GK2491 | Phosphate starvation-induced protein. | Hypothetical conserved protein; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA. | 0.961 |
| era | GK1189 | GK2488 | GK1189 | GTP-binding protein; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism. | Malonyl CoA-acyl carrier protein transacylase. | 0.764 |
| era | GK2489 | GK2488 | GK2489 | GTP-binding protein; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism. | Cytidine deaminase; This enzyme scavenges exogenous and endogenous cytidine and 2'-deoxycytidine for UMP synthesis; Belongs to the cytidine and deoxycytidylate deaminase family. | 0.950 |
| era | GK2493 | GK2488 | GK2493 | GTP-binding protein; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism. | Phosphate starvation-induced protein. | 0.749 |
| era | recO | GK2488 | GK2486 | GTP-binding protein; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism. | DNA repair protein (recombination protein O); Involved in DNA repair and RecF pathway recombination. | 0.816 |
| era | rpsF | GK2488 | GK3482 | GTP-binding protein; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism. | 30S ribosomal protein S6 (BS9); Binds together with S18 to 16S ribosomal RNA. | 0.883 |
| era | rpsG | GK2488 | GK0102 | GTP-binding protein; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism. | 30S ribosomal protein S7 (BS7); One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family. | 0.832 |
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