Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
GK2525 | GK2972 | GK2525 | GK2972 | Hypothetical conserved protein. | Hypothetical conserved protein. | 0.602 |
GK2525 | comFA | GK2525 | GK3147 | Hypothetical conserved protein. | Late competence protein. | 0.562 |
GK2525 | dnaB | GK2525 | GK2722 | Hypothetical conserved protein. | Chromosome replication initiation/membrane attachment protein. | 0.639 |
GK2525 | dnaD | GK2525 | GK2170 | Hypothetical conserved protein. | Chromosome replication initiation protein. | 0.635 |
GK2525 | dnaI | GK2525 | GK2721 | Hypothetical conserved protein. | Primosome component (helicase loader). | 0.646 |
GK2525 | rpoE | GK2525 | GK3390 | Hypothetical conserved protein. | DNA-directed RNA polymerase delta subunit; Participates in both the initiation and recycling phases of transcription. In the presence of the delta subunit, RNAP displays an increased specificity of transcription, a decreased affinity for nucleic acids, and an increased efficiency of RNA synthesis because of enhanced recycling; Belongs to the RpoE family. | 0.751 |
GK2972 | GK2525 | GK2972 | GK2525 | Hypothetical conserved protein. | Hypothetical conserved protein. | 0.602 |
GK2972 | comFA | GK2972 | GK3147 | Hypothetical conserved protein. | Late competence protein. | 0.672 |
GK2972 | dnaB | GK2972 | GK2722 | Hypothetical conserved protein. | Chromosome replication initiation/membrane attachment protein. | 0.483 |
GK2972 | dnaD | GK2972 | GK2170 | Hypothetical conserved protein. | Chromosome replication initiation protein. | 0.563 |
GK2972 | dnaI | GK2972 | GK2721 | Hypothetical conserved protein. | Primosome component (helicase loader). | 0.672 |
GK2972 | rpoE | GK2972 | GK3390 | Hypothetical conserved protein. | DNA-directed RNA polymerase delta subunit; Participates in both the initiation and recycling phases of transcription. In the presence of the delta subunit, RNAP displays an increased specificity of transcription, a decreased affinity for nucleic acids, and an increased efficiency of RNA synthesis because of enhanced recycling; Belongs to the RpoE family. | 0.658 |
GK3156 | dnaI | GK3156 | GK2721 | Hypothetical conserved protein. | Primosome component (helicase loader). | 0.724 |
GK3476 | dnaA | GK3476 | GK0001 | Replicative DNA helicase; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity. Belongs to the helicase family. DnaB subfamily. | Chromosome replication initiator protein; Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication; it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box): 5'- TTATC[CA]A[CA]A-3'. DnaA binds to ATP and to acidic phospholipids. | 0.888 |
GK3476 | dnaI | GK3476 | GK2721 | Replicative DNA helicase; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity. Belongs to the helicase family. DnaB subfamily. | Primosome component (helicase loader). | 0.898 |
GK3476 | polC | GK3476 | GK1258 | Replicative DNA helicase; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity. Belongs to the helicase family. DnaB subfamily. | DNA-directed DNA polymerase III alpha chain; Required for replicative DNA synthesis. This DNA polymerase also exhibits 3' to 5' exonuclease activity. | 0.450 |
comFA | GK2525 | GK3147 | GK2525 | Late competence protein. | Hypothetical conserved protein. | 0.562 |
comFA | GK2972 | GK3147 | GK2972 | Late competence protein. | Hypothetical conserved protein. | 0.672 |
comFA | dnaB | GK3147 | GK2722 | Late competence protein. | Chromosome replication initiation/membrane attachment protein. | 0.634 |
comFA | dnaD | GK3147 | GK2170 | Late competence protein. | Chromosome replication initiation protein. | 0.664 |
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