STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEK50495.1Predicted acetyltransferase. (404 aa)    
Predicted Functional Partners:
SEL68637.1
Competence protein ComEA.
  
    0.760
SEK50520.1
DNA-binding transcriptional regulator, MarR family.
       0.581
SEK50551.1
Major Facilitator Superfamily protein.
       0.581
SEK50460.1
Fusaric acid resistance protein-like.
       0.516
SEL94765.1
Predicted arabinose efflux permease, MFS family.
  
    0.481
SEL94568.1
Sensor histidine kinase inhibitor, KipI family.
  
  
 0.476
whiB-2
WhiB family transcriptional regulator, redox-sensing transcriptional regulator; Acts as a transcriptional regulator. Probably redox- responsive. The apo- but not holo-form probably binds DNA.
   
  
 0.471
SEL93016.1
Hypothetical protein.
   
    0.432
SEM70961.1
23S rRNA (cytidine1920-2'-O)/16S rRNA (cytidine1409-2'-O)-methyltransferase.
      
 0.422
SEM24856.1
Protein of unknown function.
  
     0.411
Your Current Organism:
Streptacidiphilus jiangxiensis
NCBI taxonomy Id: 235985
Other names: JCM 12277, NBRC 100920, S. jiangxiensis, Streptacidiphilus jiangxiensis Huang et al. 2005, strain 33214
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.