STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEK56276.1Serine phosphatase RsbU, regulator of sigma subunit. (927 aa)    
Predicted Functional Partners:
SEL39645.1
Anti-sigma B factor antagonist; Belongs to the anti-sigma-factor antagonist family.
 
   0.819
SEK48851.1
Serine phosphatase RsbU, regulator of sigma subunit.
  
     0.768
SEL65238.1
Serine phosphatase RsbU, regulator of sigma subunit.
  
     0.754
SEL27391.1
Serine phosphatase RsbU, regulator of sigma subunit.
  
     0.703
SEL18257.1
Stage II sporulation protein AA (anti-sigma F factor antagonist); Belongs to the anti-sigma-factor antagonist family.
 
   0.700
SEK47616.1
Stage II sporulation protein E (SpoIIE).
  
     0.677
SEK21416.1
Anti-anti-sigma factor; Belongs to the anti-sigma-factor antagonist family.
 
   0.674
SEM50262.1
GAF domain-containing protein.
 
 
 
0.655
SEK85230.1
Serine phosphatase RsbU, regulator of sigma subunit.
 
 
0.631
SEK56299.1
Predicted N-acetyltransferase YhbS.
       0.628
Your Current Organism:
Streptacidiphilus jiangxiensis
NCBI taxonomy Id: 235985
Other names: JCM 12277, NBRC 100920, S. jiangxiensis, Streptacidiphilus jiangxiensis Huang et al. 2005, strain 33214
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