SEK94713.1 protein (Streptacidiphilus jiangxiensis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

SEK94713.1

Iron-regulated ABC transporter membrane component SufB. (470 aa)

Predicted Functional Partners:

SEK94770.1

0.999

SEK94803.1

0.998

SEK94811.1

0.988

SEK94682.1

0.979

SEL75468.1

0.960

SEK94840.1

0.954

SEK94725.1

0.909

SEM27212.1

0.896

SEL60141.1

0.837

SEL65757.1

0.824

Your Current Organism:

Streptacidiphilus jiangxiensis

NCBI taxonomy Id: 235985
Other names: JCM 12277, NBRC 100920, S. jiangxiensis, Streptacidiphilus jiangxiensis Huang et al. 2005, strain 33214

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SEK94682.1	SEK94713.1	SAMN05414137_104366	SAMN05414137_104367	Predicted transcriptional regulator, ArsR family.	Iron-regulated ABC transporter membrane component SufB.	0.979
SEK94682.1	SEK94725.1	SAMN05414137_104366	SAMN05414137_104368	Predicted transcriptional regulator, ArsR family.	Fe-S cluster assembly protein SufD.	0.816
SEK94682.1	SEK94770.1	SAMN05414137_104366	SAMN05414137_104370	Predicted transcriptional regulator, ArsR family.	Fe-S cluster assembly ATP-binding protein.	0.801
SEK94682.1	SEK94803.1	SAMN05414137_104366	SAMN05414137_104371	Predicted transcriptional regulator, ArsR family.	Cysteine desulfurase / selenocysteine lyase; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family.	0.795
SEK94682.1	SEK94811.1	SAMN05414137_104366	SAMN05414137_104372	Predicted transcriptional regulator, ArsR family.	Nitrogen fixation protein NifU.	0.836
SEK94682.1	SEK94840.1	SAMN05414137_104366	SAMN05414137_104373	Predicted transcriptional regulator, ArsR family.	Metal-sulfur cluster biosynthetic enzyme.	0.755
SEK94713.1	SEK94682.1	SAMN05414137_104367	SAMN05414137_104366	Iron-regulated ABC transporter membrane component SufB.	Predicted transcriptional regulator, ArsR family.	0.979
SEK94713.1	SEK94725.1	SAMN05414137_104367	SAMN05414137_104368	Iron-regulated ABC transporter membrane component SufB.	Fe-S cluster assembly protein SufD.	0.909
SEK94713.1	SEK94770.1	SAMN05414137_104367	SAMN05414137_104370	Iron-regulated ABC transporter membrane component SufB.	Fe-S cluster assembly ATP-binding protein.	0.999
SEK94713.1	SEK94803.1	SAMN05414137_104367	SAMN05414137_104371	Iron-regulated ABC transporter membrane component SufB.	Cysteine desulfurase / selenocysteine lyase; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family.	0.998
SEK94713.1	SEK94811.1	SAMN05414137_104367	SAMN05414137_104372	Iron-regulated ABC transporter membrane component SufB.	Nitrogen fixation protein NifU.	0.988
SEK94713.1	SEK94840.1	SAMN05414137_104367	SAMN05414137_104373	Iron-regulated ABC transporter membrane component SufB.	Metal-sulfur cluster biosynthetic enzyme.	0.954
SEK94713.1	SEL60141.1	SAMN05414137_104367	SAMN05414137_110160	Iron-regulated ABC transporter membrane component SufB.	Selenocysteine lyase/Cysteine desulfurase.	0.837
SEK94713.1	SEL65757.1	SAMN05414137_104367	SAMN05414137_11170	Iron-regulated ABC transporter membrane component SufB.	Selenocysteine lyase/Cysteine desulfurase.	0.824
SEK94713.1	SEL75468.1	SAMN05414137_104367	SAMN05414137_112194	Iron-regulated ABC transporter membrane component SufB.	Selenocysteine lyase/Cysteine desulfurase.	0.960
SEK94713.1	SEM27212.1	SAMN05414137_104367	SAMN05414137_12248	Iron-regulated ABC transporter membrane component SufB.	Selenocysteine lyase/Cysteine desulfurase.	0.896
SEK94725.1	SEK94682.1	SAMN05414137_104368	SAMN05414137_104366	Fe-S cluster assembly protein SufD.	Predicted transcriptional regulator, ArsR family.	0.816
SEK94725.1	SEK94713.1	SAMN05414137_104368	SAMN05414137_104367	Fe-S cluster assembly protein SufD.	Iron-regulated ABC transporter membrane component SufB.	0.909
SEK94725.1	SEK94770.1	SAMN05414137_104368	SAMN05414137_104370	Fe-S cluster assembly protein SufD.	Fe-S cluster assembly ATP-binding protein.	0.999
SEK94725.1	SEK94803.1	SAMN05414137_104368	SAMN05414137_104371	Fe-S cluster assembly protein SufD.	Cysteine desulfurase / selenocysteine lyase; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family.	0.994