STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEL61289.1PDZ domain-containing protein. (272 aa)    
Predicted Functional Partners:
SEM05841.1
DNA helicase IV.
  
     0.610
whiB-3
Transcription factor WhiB; Acts as a transcriptional regulator. Probably redox- responsive. The apo- but not holo-form probably binds DNA.
  
     0.583
SEM71034.1
Haloacid Dehalogenase Superfamily Class (subfamily) IIA.
  
     0.554
SEL61680.1
DNA helicase IV.
  
     0.527
SEM37742.1
Protein of unknown function.
  
     0.525
SEL61309.1
IclR helix-turn-helix domain-containing protein.
       0.524
sepF
Cell division inhibitor SepF; Cell division protein that is part of the divisome complex and is recruited early to the Z-ring. Probably stimulates Z-ring formation, perhaps through the cross-linking of FtsZ protofilaments. Its function overlaps with FtsA.
  
     0.519
SEK72535.1
Transmembrane protein of unknown function.
  
     0.483
SEL61272.1
4-hydroxyphenylpyruvate dioxygenase.
       0.480
SEL61556.1
Protein of unknown function.
  
     0.478
Your Current Organism:
Streptacidiphilus jiangxiensis
NCBI taxonomy Id: 235985
Other names: JCM 12277, NBRC 100920, S. jiangxiensis, Streptacidiphilus jiangxiensis Huang et al. 2005, strain 33214
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