STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEL94081.1N-acetylmuramoyl-L-alanine amidase. (321 aa)    
Predicted Functional Partners:
SEL02794.1
Hypothetical protein.
    
   0.930
SEK72036.1
N-acetylmuramoyl-L-alanine amidase.
    
 0.841
SEK72660.1
Membrane associated serine protease, rhomboid family.
  
   0.750
SEL04231.1
Membrane associated serine protease, rhomboid family.
  
   0.750
SEL75439.1
Membrane associated serine protease, rhomboid family.
  
   0.750
SEM33719.1
Rhomboid protease GluP.
  
   0.750
SEM39969.1
Membrane associated serine protease, rhomboid family.
  
   0.750
SEL26843.1
Hypothetical protein.
  
 0.718
SEM39026.1
Cell wall-associated hydrolase, NlpC family.
 
 
 0.616
SEL07585.1
RNA polymerase sigma-70 factor, ECF subfamily.
   
    0.554
Your Current Organism:
Streptacidiphilus jiangxiensis
NCBI taxonomy Id: 235985
Other names: JCM 12277, NBRC 100920, S. jiangxiensis, Streptacidiphilus jiangxiensis Huang et al. 2005, strain 33214
Server load: low (20%) [HD]