STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEL94748.1Helix-turn-helix domain-containing protein. (165 aa)    
Predicted Functional Partners:
SEL94765.1
Predicted arabinose efflux permease, MFS family.
 
     0.837
SEK74792.1
Predicted arabinose efflux permease, MFS family.
  
     0.560
SEM34631.1
Dipeptidyl aminopeptidase/acylaminoacyl peptidase.
  
    0.546
SEL94694.1
Hypothetical protein.
       0.519
SEL94723.1
Hypothetical protein.
       0.519
SEL94673.1
Hypothetical protein.
       0.503
SEM10827.1
Predicted arabinose efflux permease, MFS family.
  
     0.461
SEL85956.1
DinB superfamily protein.
  
     0.427
Your Current Organism:
Streptacidiphilus jiangxiensis
NCBI taxonomy Id: 235985
Other names: JCM 12277, NBRC 100920, S. jiangxiensis, Streptacidiphilus jiangxiensis Huang et al. 2005, strain 33214
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.