STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEM03187.1Helix-turn-helix domain-containing protein. (265 aa)    
Predicted Functional Partners:
SEM03203.1
Ubiquinone/menaquinone biosynthesis C-methylase UbiE.
       0.757
SEL72565.1
Glutamate synthase (NADPH/NADH) large chain.
    
  0.744
rpoA
DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.741
SEL02566.1
2-oxoglutarate ferredoxin oxidoreductase subunit alpha.
     
 0.690
SEM03220.1
Putative drug exporter of the RND superfamily.
       0.686
SEM30757.1
Uncharacterized conserved protein PhnB, glyoxalase superfamily.
 
    0.652
ribBA
3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family.
    
  0.633
SEM74598.1
Hypothetical protein.
  
     0.566
SEL43081.1
DNA-binding transcriptional regulator, MerR family.
  
   
 0.530
SEK59401.1
Pimeloyl-ACP methyl ester carboxylesterase.
       0.483
Your Current Organism:
Streptacidiphilus jiangxiensis
NCBI taxonomy Id: 235985
Other names: JCM 12277, NBRC 100920, S. jiangxiensis, Streptacidiphilus jiangxiensis Huang et al. 2005, strain 33214
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.